BGT

[PMID:26500154] [Bioinformatics]

BGT: efficient and flexible genotype query across many samples

“most existing VCF-based tools do not support expressive data query.” BGT does: “the design of one non-reference allele per record” — good for data merge; “high-performance C code at the core” — 80-fold faster than Perl and Python. Work from Heng Li.

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