VariantSpark

[PMID:26651996] [BMC Genomics]

VariantSpark: population scale clustering of genotype information

“We hence developed a purpose-built approach in SPARK to perform machine learning tasks on genomic data, such as clustering of individual genomes. We utilise SPARK’s machine learning library, MLlib, and provide an interface to the standard variant data format, Variant Call Format (VCF) [4], which opens up the application of MLlib’s different machine learning algorithms to a wide range of genotype-based analysis tasks.”

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