TCGA2BED

[PMID:28049410] [BMC Bioinformatics]

TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas

It converts TCGA original data and adds extra annotation into BED format to be queried byThe GenoMetric Query Language. The group has an open access FTP repository, which contains the original TCGA data sets and the corresponding data converted into the BED format.

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