Opossum

[PMID:28239666] [Wellcome Open Research]

Making the most of RNA-seq: Pre-processing sequencing data with Opossum for reliable SNP variant detection

“Opossum pre-processes RNA-seq reads prior to variant calling, and although it has been designed to work specifically with Platypus, it can be used equally well with other variant callers such as GATK HaplotypeCaller.”

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