SuperTranscripts

[PMID: 28778180] [Genome Biology]

SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes

“Numerous methods have been developed to analyse RNA sequencing (RNA-seq) data, but most rely on the availability of a reference genome, making them unsuitable for non-model organisms. Here we present superTranscripts, a substitute for a reference genome, where each gene with multiple transcripts is represented by a single sequence. The Lace software is provided to construct superTranscripts from any set of transcripts, including de novo assemblies. “

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