Tag: Framework

miRMaster

[PMID: 28911107] [Nucleic Acids Research]

Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs

“provides a wide range of modules for quantification of miRNAs and other non-coding RNAs, discovering new miRNAs, isomiRs, mutations, exogenous RNAs and motifs. Use-cases comprising hundreds of samples are processed in less than 5 h with an accuracy of 99.4%.”

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Reproducible Computational Workflows

[PMID:28288103] [Nature Biotechnology]

Reproducibility of computational workflows is automated using continuous analysis

“We report the development of continuous analysis, a workflow that enables reproducible computational analyses. Continuous analysis combines Docker, a container technology akin to virtual machines, with continuous integration, a software development technique, to automatically rerun a computational analysis whenever updates or improvements are made to source code or data.”

[PMID:28398311] [Nature Biotechnology]

Nextflow enables reproducible computational workflows

“Nextflow, a workflow management system that uses Docker technology for the multi-scale handling of containerized computation.”